PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002395.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YB
Protein Properties Length: 94aa    MW: 10543.5 Da    PI: 4.5099
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002395.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB102.53e-321633597
                    NF-YB 35 vqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                             +qec+sefisfvt+eas+kcq+e+rkt+ngdd++wal++lGf+ y+e+++ yl+k+re e+++
  Itr_sc002395.1_g00001.1  1 MQECASEFISFVTGEASEKCQKENRKTVNGDDICWALSSLGFDVYAEAMTRYLHKFREYERQR 63
                             79**********************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR006151.9E-17119No hitNo description
SuperFamilySSF471138.38E-24177IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.2E-31177IPR009072Histone-fold
PfamPF008082.1E-13137IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PROSITE patternPS006850420IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.9E-172038No hitNo description
PRINTSPR006151.9E-173957No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MQECASEFIS FVTGEASEKC QKENRKTVNG DDICWALSSL GFDVYAEAMT RYLHKFREYE  60
RQRANQTKGA SSNDDDGSPC SQPDKQTAGE TAYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B6e-251583592Transcription factor HapC (Eurofung)
4g92_B6e-251583592Transcription factor HapC (Eurofung)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760265.11e-41PREDICTED: nuclear transcription factor Y subunit B-4-like
RefseqXP_016458099.11e-41PREDICTED: nuclear transcription factor Y subunit B-4-like
SwissprotO040274e-33NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLD7U9R67e-41D7U9R6_VITVI; Putative uncharacterized protein
STRINGVIT_14s0060g02660.t012e-40(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.12e-34nuclear factor Y, subunit B4